Ticket #40 (closed defect: invalid)

Opened 11 years ago

Last modified 11 years ago

xuvtools: Data set L21_P30_nr1e_dorsal_I.ims crashes stitcher

Reported by: emmenlau Owned by: emmenlau
Priority: major Milestone:
Component: imagej_plugins Version:
Keywords: Cc: xuvtools, stitcher, crash


When loading the data set L21_P30_nr1e_dorsal_I.ims (Dominique Spirig, FMI Basel) the stitcher crashes.

Change History

Changed 11 years ago by emmenlau

  • status changed from new to closed
  • resolution set to invalid

Invalid because the data set is not an Imaris hdf5 file, but rather a special Bitplane temporary file format.

LOCI Bioformats command line tools show:

./showinf ./L21_P30_nr1e_dorsal_I.ims 
Checking file format [Bitplane Imaris]
Initializing reader
        Verifying Imaris RAW format
        Reading header
        Calculating image offsets
        Populating metadata
Initialization took 0.035s

Reading core metadata
Filename = ./L21_P30_nr1e_dorsal_I.ims
Series count = 1
Series #0:
        Image count = 188
        RGB = false (1)
        Interleaved = false
        Indexed = false (true color)
        Width = 512
        Height = 512
        SizeZ = 188
        SizeT = 1
        SizeC = 1
        Thumbnail size = 128 x 128
        Endianness = motorola (big)
        Dimension order = XYZCT (certain)
        Pixel type = uint8
        Metadata complete = true
        Thumbnail series = false
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